pairtools
  • Overview
  • Quickstart
  • Installation
  • Parsing sequence alignments into Hi-C pairs
  • Sorting pairs
  • Formats for storing Hi-C pairs
  • Pairtools stats as a source of quality control metrics
  • Workflows and Parameters
  • Design notes
  • Command-line API

Tutorials

  • Pairtools walkthrough
  • Pairtools restrict walkthrough
  • Pairtools phase walkthrough
  • Pairtools benchmarking
pairtools
  • Search

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